We’ve discovered the perfect marriage of two beloved desserts – strawberry cheesecake cupcakes that’ll make your taste buds sing with joy! These delightful treats combine the rich creamy texture of classic New York-style cheesecake with the fluffy convenience of cupcakes and the fresh sweetness of ripe strawberries.
What makes these cupcakes absolutely irresistible is their three-layer perfection: a buttery graham cracker crust base that provides that signature cheesecake crunch, followed by a velvety smooth cream cheese filling that’s light yet indulgent, and crowned with fresh strawberry compote that bursts with summer flavor.
Ingredients
We’ve organized our strawberry cheesecake cupcakes into three distinct components to ensure perfect results. Each layer contributes its own unique flavor and texture to create the ultimate dessert experience.
For the Cupcakes
- 1 cup graham cracker crumbs
- 3 tablespoons granulated sugar
- 4 tablespoons unsalted butter, melted
- 1 cup all-purpose flour
- 1 teaspoon baking powder
- 1/4 teaspoon salt
- 1/3 cup unsalted butter, softened
- 1/2 cup granulated sugar
- 1 large egg
- 1/2 cup whole milk
- 1 teaspoon vanilla extract
For the Cheesecake Filling
- 16 ounces cream cheese, softened to room temperature
- 1/2 cup granulated sugar
- 2 large eggs
- 1/4 cup sour cream
- 1 teaspoon vanilla extract
- 2 tablespoons all-purpose flour
- Pinch of salt
For the Strawberry Topping
- 2 cups fresh strawberries, hulled and diced
- 1/4 cup granulated sugar
- 2 tablespoons water
- 1 tablespoon cornstarch
- 1 tablespoon lemon juice
- 1/4 teaspoon vanilla extract
Equipment Needed

Creating these strawberry cheesecake cupcakes requires exact tools to achieve professional results. We recommend gathering all equipment before beginning the baking process to ensure smooth preparation.
Stand mixer or electric hand mixer serves as our primary mixing tool for combining ingredients efficiently. The mixer helps create the proper texture for both the cupcake batter and cream cheese frosting while preventing overmixing.
Muffin tin with cupcake liners provides the essential baking vessel for our cupcakes. Standard 12-cup muffin tins work perfectly for this recipe while paper liners prevent sticking and make removal effortless.
Blender or food processor becomes necessary for creating strawberry puree or powdered strawberries depending on your preferred method. These appliances ensure smooth consistency and proper integration of strawberry flavors throughout the recipe.
Piping bag and piping tip allow us to apply the cream cheese frosting with precision and professional appearance. Choose a star tip or round tip based on your desired decorative style.
Measuring cups and spoons ensure accuracy in our ingredient ratios which directly impacts the final texture and taste. We recommend using both dry and liquid measuring tools for optimal results.
Additional helpful tools include mixing bowls in various sizes for separating ingredients and a rubber spatula for folding techniques. Having these items readily available streamlines the entire baking process and helps achieve consistent results every time we make these delightful cupcakes.
Instructions

Follow these step-by-step instructions to create perfect strawberry cheesecake cupcakes with their signature three-layer construction. Each component requires careful attention to timing and technique for optimal results.
Prep the Cupcake Batter
Preheat your oven to 350°F and prepare your muffin tin with cupcake liners. We start by creating the graham cracker crust foundation that gives these cupcakes their distinctive cheesecake character.
Combine 2 cups of graham cracker crumbs with 1/2 cup of unsalted butter and 1/4 cup of sugar in a medium bowl. Mix until the ingredients form a cohesive mixture that holds together when pressed. Press this mixture firmly into the bottom of each cupcake liner using the back of a spoon or your fingers.
Bake the graham cracker crusts for 3-5 minutes until they appear lightly browned and set. Remove from oven and let cool while you prepare the cupcake batter.
Beat 12 tablespoons of unsalted butter with 1 cup plus 2 tablespoons of sugar using your stand mixer or electric hand mixer until the mixture becomes light and fluffy. Add 1 teaspoon of vanilla extract and mix until combined.
Whisk together 1 1/2 cups of flour, 1 teaspoon of baking powder, and 1/2 teaspoon of salt in a separate bowl. Add this flour mixture to the butter mixture alternately with 1/2 cup of sour cream, beginning and ending with the flour mixture.
Beat 4 large egg whites in a clean bowl until stiff peaks form. Gently fold one-third of the egg whites into the batter to lighten it, then fold in the remaining egg whites along with 2 cups of chopped fresh strawberries until just combined.
Make the Cheesecake Filling
Beat 8 ounces of softened cream cheese with 1/2 cup of unsalted butter in your mixer bowl until the mixture becomes completely smooth and fluffy. Scrape down the sides of the bowl as needed to ensure even mixing.
Gradually add 3 3/4 cups of powdered sugar, beating on low speed initially to prevent sugar clouds, then increasing to medium speed until fully incorporated. Add 1 teaspoon of vanilla extract and beat until the filling reaches a smooth, pipeable consistency.
Transfer the cheesecake filling to a piping bag fitted with your preferred tip, or keep it in the mixing bowl if you plan to spread it with a knife or offset spatula.
Assemble the Cupcakes
Fill each muffin cup three-fourths full with the prepared cupcake batter, being careful not to disturb the graham cracker crust layer underneath. The batter should sit nicely on top of the crust without mixing into it.
Tap the muffin tin gently on your counter to release any air bubbles and ensure even distribution of the batter. This step helps prevent uneven rising during baking.
Bake the Cupcakes
Place the filled muffin tin in your preheated 350°F oven and bake for 18-22 minutes. Test for doneness by inserting a toothpick into the center of a cupcake – it should come out clean or with just a few moist crumbs attached.
Remove the cupcakes from the oven and let them cool in the pan for 5 minutes before transferring to a wire cooling rack. Allow the cupcakes to cool completely before applying the cheesecake filling, as warm cupcakes will cause the cream cheese mixture to melt and lose its shape.
Once cooled, pipe or spread the cheesecake filling generously on top of each cupcake, creating swirls or peaks as desired for an attractive presentation.
Directions for Strawberry Topping

We’ll create a vibrant strawberry topping that perfectly complements our cupcakes’ rich cheesecake flavor. This fresh compote adds natural sweetness and beautiful color to complete our dessert masterpiece.
Fresh Strawberry Compote
We start by selecting the ripest strawberries for maximum flavor and natural sweetness. Place 2 cups of fresh strawberries in a blender or food processor and puree until smooth. The consistency should be thick but pourable for easy drizzling.
Transfer the strawberry puree to a medium saucepan over low heat. Add 1 tablespoon of granulated sugar to enhance the natural fruit flavors without overpowering them. Squeeze fresh lemon juice directly into the mixture to brighten the taste and help preserve the vibrant red color.
Stir the mixture gently as it warms, allowing the sugar to dissolve completely. Cook for 8 to 10 minutes until the compote thickens slightly and coats the back of a spoon. Remove from heat and let cool to room temperature before using.
Garnish and Assembly
We begin assembly by piping or spreading our prepared cream cheese frosting generously on top of each cooled cupcake. Create attractive swirls or peaks for visual appeal that mimics traditional cheesecake presentation.
Drizzle the cooled strawberry compote over the frosted cupcakes using a spoon or squeeze bottle for precise control. Allow some compote to pool on top while letting excess drip down the sides for an elegant finish.
Top each cupcake with fresh strawberry slices cut at an angle for professional presentation. Add graham cracker sticks inserted vertically into the frosting for extra texture and visual interest. Garnish with additional whole strawberries or mint leaves for a restaurant quality appearance.
Make-Ahead Instructions

Planning ahead transforms these strawberry cheesecake cupcakes into a stress-free dessert option for special occasions. We recommend breaking down the preparation process across multiple days to ensure optimal results and maintain freshness.
Advance Preparation Timeline
Baking the cupcake bases up to 4 days ahead allows us to store them properly in the refrigerator while maintaining their texture and flavor. We wrap each cooled cupcake individually in plastic wrap before placing them in an airtight container. The graham cracker crusts hold their crunch beautifully when stored this way.
Our cream cheese frosting benefits from advance preparation as well. We blend the cream cheese and butter mixture with powdered sugar and vanilla extract then refrigerate it for up to 3 days. This resting period actually improves the frosting’s consistency and makes it easier to pipe when we’re ready to assemble.
Component Storage Guidelines
Fresh strawberry compote maintains its vibrant color and flavor when prepared 2 days before assembly. We store the cooled compote in a sealed container in the refrigerator and give it a gentle stir before using. The natural pectin in strawberries helps the compote retain its perfect consistency.
Graham cracker crumbs can be prepared and stored at room temperature for up to one week in an airtight container. We crush them to the desired texture and keep them ready for quick crust assembly when needed.
Final Assembly Strategy
Assembly works best when completed just before serving to maintain the cupcakes’ optimal texture and appearance. We bring the cream cheese frosting to room temperature for 15-20 minutes before piping to achieve smooth application. The strawberry compote should remain chilled until drizzling to prevent the frosting from becoming too soft.
Each component stores well individually but combining them too early can affect the overall texture. Fresh strawberry garnishes and graham cracker sticks add the final touch immediately before presentation to preserve their crispness and visual appeal.
Storage Tips

We recommend storing your strawberry cheesecake cupcakes in an airtight container in the refrigerator to maintain their freshness and creamy texture. These delicate treats will stay fresh for up to three to four days when properly refrigerated.
Storage Method | Duration | Temperature |
---|---|---|
Refrigerated (airtight container) | 3-4 days | 35-40°F |
Room temperature serving | 1-2 hours | 68-72°F |
Airtight Container Selection
We suggest using specialized cupcake carriers or containers designed for decorated desserts. These containers prevent moisture from affecting the cream cheese frosting and strawberry compote decorations while maintaining the structural integrity of each cupcake.
Serving Temperature Options
Our strawberry cheesecake cupcakes taste delicious when served either chilled directly from the refrigerator or at room temperature. We recommend removing them from refrigeration 15 to 20 minutes before serving if you prefer a softer texture.
Layer Separation Technique
When storing multiple cupcakes in one container, we place parchment paper between layers to prevent the frosting from sticking to the container lid. This simple step preserves the beautiful presentation of your cream cheese frosting and strawberry garnishes.
Frosting Enhancement Tips
We enhance our strawberry frosting using freeze dried strawberries, which intensify the flavor while maintaining the proper consistency for storage. Adding red gel food coloring creates a vibrant appearance that stays true even after refrigeration.
Fresh strawberry slices used for decoration should be added just before serving rather than during initial storage to prevent excess moisture from affecting the cupcake texture.
Serving Suggestions

These strawberry cheesecake cupcakes shine brightest when we present them thoughtfully and serve them at their optimal temperature. We recommend removing the cupcakes from refrigeration 15 to 20 minutes before serving to achieve the perfect texture balance between the creamy filling and tender cake base.
Fresh strawberry slices make the most elegant garnish for our cupcakes. We arrange thin strawberry wedges on top of each frosted cupcake just before serving to maintain their vibrant color and crisp texture. Graham cracker crumbs sprinkled around the base create an attractive presentation that echoes the crust flavor.
Temperature plays a crucial role in serving these delicate treats. We find that chilled cupcakes offer a firmer cheesecake texture that many guests prefer during warmer months. Room temperature serving allows the flavors to bloom more fully and creates a softer mouthfeel that highlights the cream cheese frosting.
Individual serving plates enhance the dessert experience we create for our guests. We place each cupcake on a small dessert plate with a dessert fork to make eating more comfortable. A light dusting of powdered sugar around the plate adds a professional bakery appearance.
Pairing beverages elevate these cupcakes into a complete dessert course. We suggest serving them alongside freshly brewed coffee or black tea to balance the sweetness. Sparkling water with a twist of lemon provides a refreshing palate cleanser between bites.
Timing our service ensures the best possible presentation. We add fresh strawberry compote drizzles immediately before serving to prevent the colors from bleeding into the frosting. Graham cracker stick garnishes maintain their crunch when added at the last moment rather than during storage.
Special occasions call for creative presentation ideas that make our cupcakes memorable. We arrange them on tiered serving stands for parties or create individual gift boxes for take home treats. Edible flowers like small pansies or mint leaves provide an upscale garnish option for formal events.
Conclusion
These strawberry cheesecake cupcakes bring together the best of both dessert worlds – the creamy richness of New York-style cheesecake and the portable convenience of cupcakes. We’ve shown you how to create bakery-quality results right in your own kitchen.
The three-layer approach ensures every bite delivers perfect balance. From the buttery graham cracker base to the silky cream cheese filling and bright strawberry topping each element contributes to an unforgettable dessert experience.
Whether you’re planning ahead for a special occasion or treating yourself to something extraordinary these cupcakes deliver impressive results. With proper storage techniques and serving suggestions you’ll have a show-stopping dessert that’s sure to become a favorite in your recipe collection.
Frequently Asked Questions
What makes strawberry cheesecake cupcakes different from regular cupcakes?
Strawberry cheesecake cupcakes feature a unique three-layer structure that combines the best of both desserts. They have a buttery graham cracker crust base, a smooth cream cheese filling, and are topped with fresh strawberry compote. This creates a more complex flavor profile and texture compared to traditional cupcakes.
What equipment do I need to make strawberry cheesecake cupcakes?
Essential equipment includes a stand mixer or electric hand mixer, muffin tin with cupcake liners, and a blender or food processor for strawberry puree. You’ll also need a piping bag and tip for frosting, measuring cups and spoons, mixing bowls, and a rubber spatula for best results.
Can I make strawberry cheesecake cupcakes ahead of time?
Yes! You can bake cupcake bases up to 4 days in advance and store them properly. The cream cheese frosting can be prepared 3 days ahead, and strawberry compote can be made 2 days prior. However, final assembly should be done just before serving for optimal texture and appearance.
How should I store strawberry cheesecake cupcakes?
Store cupcakes in an airtight container in the refrigerator for up to 3-4 days. Use specialized cupcake carriers to protect decorations, and place parchment paper between layers when storing multiple cupcakes. Add fresh strawberry slices just before serving to maintain their appearance.
What’s the best serving temperature for strawberry cheesecake cupcakes?
Cupcakes can be served chilled or at room temperature. For softer texture, remove from refrigeration 15-20 minutes before serving. Chilled cupcakes offer firmer texture, while room temperature allows flavors to bloom more fully. Choose based on your preference.
How do I make the strawberry topping for the cupcakes?
The strawberry topping is made by pureeing fresh strawberries and cooking them with sugar and lemon juice to create a compote. This process creates natural sweetness and vibrant color that perfectly complements the rich cheesecake flavor of the cupcakes.